6 Commits

Author SHA1 Message Date
Thomas Ales [M S E] 2937c017a7 Merge the Documents/sras-viewer working copy into this repo
The two clones had diverged from origin/main (191d1b8) and both had
grown uncommitted work. This merges the other clone's three commits and
reconciles four conflicting files.

Both clones independently grew a feature called "batch export", but they
are different sweeps and both are kept:
- BatchExportWorker (this clone) — every angle x channel of the one open
  file, fixed colorbar per channel, under a new Export menu.
- BatchExportImagesWorker (other clone) — the current view across many
  selected files, process-pooled, under Convert.

Conflict resolutions of note:
- sras_average.py: the other clone's memory-bounded rewrite had silently
  reverted this clone's float32 -> int16 accumulator fix, which exists to
  keep averaged output from landing 1 ADC count off the original tool.
  Kept the rewrite, re-applied the fix, and corrected the two docstrings
  that still claimed float32.
- tests/test_compute.py: kept the other clone's meta["waveforms"] key
  (meta["data"] no longer exists for this fixture and would KeyError)
  and its laser_freq_hz assertions, plus this clone's int16 expectation
  and its dropped subprocess returncode assertions.
- ComputeWorker: row_avg_n and min_freq_mhz were added independently on
  either side; both are now threaded through.
- compute_rf_image's `exact` parameter is gone, removed by the other
  clone's PyFFTW peak-search rewrite. It had no remaining callers.

Verified: 149 passed with a complete dependency set. The failures seen
with this clone's own .venv are a missing scikit-image, which predates
this merge and reproduces identically on the pre-merge commit.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
2026-08-12 10:36:25 -05:00
Thomas Ales [M S E] a8b962e317 Add min peak frequency floor (CACH v4) and Batch Export View as Images
Two strands of in-progress work, committed together because they overlap
in sras_workers.py and main_window.py.

Min peak frequency floor:
- CACH tail bumped to version 4, adding u32 min_freq_khz provenance in
  fixed-point kHz (a float32 20.1 reads back as 20.10000038 and would
  report a spurious mismatch forever). v1-v3 tails read as no floor.
- Stored FFT caches are accepted when the reader's floor is at or above
  the stored one, since a higher floor is re-applicable by masking.
- Floor plumbed through compute_rf_image, BatchCacheWorker and the viewer.

Batch Export View as Images:
- New sras_render.py holds draw_view_image, shared by the Qt canvas and
  the headless exporter so a PNG cannot drift from what the GUI shows.
  Deliberately Qt-free so it is importable in a pool subprocess.
- BatchExportImagesWorker renders the current view settings across many
  files, process-pooled with an inline fallback, reporting per-file
  output names so the caller can flag same-stem collisions.
- _axes_extent extracted into sras_format for both render paths.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
2026-08-12 10:17:43 -05:00
Thomas Ales [M S E] efecc154fe Keep stored row-averaged caches eligible on the fallback compute path
ComputeWorker dropped row_avg_n, so a stored row-averaged cache was
ineligible whenever the fallback compute served the image instead of the
DC precompute path. Thread the viewer's precomputed_row_avg_n through
ComputeWorker and the batch export worker's compute_rf_image call.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
2026-08-12 10:17:16 -05:00
Thomas Ales [M S E] 1caf6373cb Replace zoom FFT peak search with a budget-bounded PyFFTW direct transform
Drop the coarse+fine zoom refinement, the SciPy FFT backend, and the
exact= audit path in favor of a single always-on full-transform peak
search (_peak_bins). Block size is now derived from a per-thread memory
budget (_fft_block_for/SRAS_FFT_PLAN_BUDGET_MB) instead of a fixed
constant, so the existing block-parallel PyFFTW pool stays memory-safe
at high pad factors without the zoom algorithm's bookkeeping. Also
removes the now-unused threadpoolctl dependency and the FFT backend
selector from the UI.

Also includes a pre-existing min_freq_mhz peak-search floor (excludes
bins below a caller-supplied frequency from the argmax) that was
already implemented and tested in the working tree.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
2026-08-10 14:14:38 -05:00
Thomas Ales d5914b5793 Stop discarding precomputed FFT data on view switches
The display path hardcoded row_avg_n=0 when checking a file's stored FFT
cache, since the main window has no row-averaging control (only the
batch-only RowAverageFftOptionsDialog). Once a file was batch-computed with
row-averaging, every view switch saw a phantom provenance mismatch and
silently launched a full raw recompute, discarding the precomputed data.

The display now asks for the stored image at the settings it was actually
computed under (bg-sub/pad/row-averaging), rather than the window's live
controls, so a stored or already-computed image is always shown once
present. Those controls now only affect a first-time compute for an
uncached angle or an explicit batch recompute -- never what's already on
screen. DC threshold is unaffected: it stays live, since re-masking a
cached image is free.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
2026-08-09 18:21:34 -05:00
Thomas Ales 3989c2a1b8 Implement row-averaged FFT feature for same-row SNR cleanup
Add row-averaged FFT feature with configurable window size (row_avg_n
parameter) for improved signal-to-noise ratio on noisy scans. Includes:

- Gaussian-weighted same-row neighbor averaging (never crosses rows)
- Masked/renormalized convolution handling for edge cases and masked samples
- Cache format v2 with row_avg_n tracking to prevent silent cache mismatches
- GUI dialog option for row-average window configuration
- Comprehensive tests validating kernel properties, background subtraction
  invariance, and cache dispatch

Co-Authored-By: Claude Haiku 4.5 <noreply@anthropic.com>
2026-08-07 21:50:05 -05:00